Class: Mapper::CodonGray

Inherits:

CodonMod

• Object
• CodonMod
• Mapper::CodonGray

show all

Defined in:

../lib/codon_gray.rb

Overview

Instance Attribute Summary

Attributes inherited from CodonMod

#bit_size, #random

Instance Method Summary (collapse)

• - (Object) bit_size=(bit_size)

  Set the number of bits per codon.

• - (Object) generate(numof_choices, index, dummy = nil)

  Create the codon from the index of the choice and number of choices.

• - (CodonGray) initialize(bits = 8) constructor

  Initialise a codon representation.

• - (Object) interpret(numof_choices, codon, dummy = nil)

  Interpret the codon given a number of choices.

• - (Object) raw_read(codon)

  Read a raw codon value.

Methods inherited from CodonMod

#mutate_bit, #rand_gen, #valid_codon?

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# File '../lib/codon_gray.rb', line 15

def initialize( bits=8 )
  super
  self.bit_size = bits
end

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# File '../lib/codon_gray.rb', line 21

def bit_size= bit_size
  super
  x = ['0','1'] 
  (bit_size-1).times do
    y = (x.map { |i| '0'+i }).concat( x.reverse.map { |i| '1'+i } )
    x=y 
  end

  @gray = x.map { |i| i.to_i(2) }
  @reverse = []
  @gray.each_with_index { |g,i| @reverse[g] = i } 
end

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# File '../lib/codon_gray.rb', line 42

def generate( numof_choices, index, dummy=nil )
  @gray[super]
end

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# File '../lib/codon_gray.rb', line 36

def interpret( numof_choices, codon, dummy=nil )
  super( numof_choices, @reverse[codon] )
end

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# File '../lib/codon_gray.rb', line 47

def raw_read codon
  @reverse[codon]
end